All functions

MESS3D()

Calculate MESS

bottomRaster()

Bottom raster generation

centerPointRasterTemplate()

Center Point Raster Template

cleanDepth()

Clean and flag coordinates based on intersection with a land polygon, intersection with a bathymetry layer, and/or by a given depth range

depthMatch()

Match the depth values given in an occurrence dataset to the depth slice values of a user provided spatRaster stack

diversityStack()

Diversity stack

downsample()

Occurrence downsampling

env_stack_transform()

Coverts a list of 'SpatRaster' stacks where the elements are environmental variables and the layers are depths to a list of SpatRaster stacks where the elements are depths and the layers are environmental variables

interpolateRaster()

Interpolate patchily sampled rasters

mSampling2D()

2D background sampling

mSampling3D()

3D background sampling

marineBackground()

Marine background shapefile generation

maxent_3D()

Create 3D Ecological Niche Models with Maxent

oneRasterPlot()

Single raster plot

partition_3D()

Create 3D partitions

plotLayers()

Plotting 3D model in 2D

pointCompMap()

Comparative point mapping

pointMap()

Point mapping

rasterComp()

Comparative raster mapping

smoothRaster()

Smooth rasters

threshold_3D()

Test different threshold levels and produce presence/absence layers for 3D models

transectPlot()

Plot vertical sample

xyzSample()

Sampling from a SpatRaster vector using 3D coordinates