voluModel

Summary

This package is designed to facilitate modeling species’ ecological niches and geographic distributions based on occurrences and environments that have a vertical as well as horizontal component, and projecting models into three-dimensional geographic space. Working in three dimensions is useful in an aquatic context when the organisms one wishes to model can be found across a wide range of depths in the water column.

Please cite voluModel. Run the following to get the appropriate citation for the version you’re using:

citation(package = "voluModel")
## Owens H, Rahbek C (2024). _voluModel: Modeling Species Distributions in Three Dimensions_. doi:
## 10.5281/zenodo.7813394  (URL: https://doi.org/10.5281/zenodo.7813394), R package version 0.2.2, <URL:
## http://CRAN.R-project.org/package=voluModel>.
##
## A BibTeX entry for LaTeX users is
##
##  @Manual{,
##    title = {{voluModel}: Modeling Species Distributions in Three Dimensions},
##    author = {Hannah L. Owens and Carsten Rahbek},
##    year = {2024}
##    note = {R package version 0.2.2},
##    url = {http://CRAN.R-project.org/package=voluModel},
##    doi = {10.5281/zenodo.5792654},
##  }

Installation 

install.packages("voluModel")

Or, install GitHub development version (version 0.2.1):

devtools::install_github("hannahlowens/voluModel", build_vignettes = TRUE)

Getting Started

  1. Introduction
  2. Processing Rasters
  3. Sampling Environtmental Data in 3D
  4. Visualization Tools
  5. Generalized Linear Model Workflow

Meta

  • Please report any issues or bugs.
  • License: GPL-3
  • Get citation information for voluModel in R using citation(package = 'voluModel')

Acknowledgements

EU flag

  • This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 891702.